Fungal Genomics

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NSF Funded Research Experience for Undergraduates

Weekly seminars are held with the potential faculty mentors for the individual lab section of the program giving a brief review of their work.

From these talks the participants will request the areas they would like to do research in during the individual portion of the program. The program will begin on May 20, and end on July Participants will be expected to participate in research at least 40 hours per week.

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Students may not enroll in classes or hold outside employment during the program. All participants are expected to stay for the full 10 weeks.

Architecture of Microevolutionary Change in Fungal Populations

Applicants must be undergraduate students who are citizens or permanent residents of the United States. Students who have either graduated or recently completed all requirements for their degree are not eligible.

Leveraging single-cell genomics to expand the fungal tree of life | Nature Microbiology

A completed all parts application should be mailed to Jonathan Arnold, Genetics Dept. The Fungal Pathogen Genomics course provides hands-on training on how to take advantage of unique tools offered by each database; develop testable hypotheses, and investigate transcriptomics, proteomics and genomics datasets across multiple databases and different user interfaces.

Daily activities at the workshop will include individual and group hands-on training exercises, supplementary lectures on bioinformatic techniques and tools used by various databases, and presentations by distinguished guest speakers. For example, you will learn how to:. The course programme will include lectures, discussions and practical, computer-based sessions consisting of hands-on exercises covering the following topics:.

The course does not include training in command-line data manipulation or analysis. Learning outcomes After attending this course, participants should be able to:. Please contact us for the commercial fee. If you would like to apply for a bursary, please complete the bursary section of the online application form. Bursaries can be applied for as part of the course application form. Applicants will be notified of a bursary award along with their place on the course, usually within one month of the application deadline.

II. Comparative genomics of fungi

The decision of the selection committee is final. Please note that both the applicant and sponsor are required to provide a justification for the bursary as part of the application. Accommodation services phishing scam — please be vigilant. More information. Saccharomyces cerevisiae is the best-studied fungus and has a genome comprised of about 12 Mb, with 5, genes that code for proteins , and the fission yeast Schizosaccharomyces pombe is also an important model organism for which a complete genome is available of However, neither of these yeasts is an adequate model for filamentous fungi, which have more genes approximately 8, and bigger genomes 30 to 40 Mb ; both features are presumably related to the wider morphogenetic, metabolic, and ecological capabilities of filamentous fungi.


Certainly, it is already clear that several genes present in filamentous fungi are not present in yeasts, so comparative genomics is a growing business. There are several genome projects underway and planned; they include many filamentous fungi.

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We have already used several examples from the wealth of data available to illustrate a range of topics in this textbook and these examples, together with what we will show you in this Section of the range of detailed information that is online, may well inspire you to see how studies of this sort could contribute to your own interests.

Interestingly, with more than 2, already fully sequenced or in progress, the range of fungal genomes available is the widest sampling of genomes from any eukaryotic kingdom. This is true now and was even true when we wrote the first edition of this textbook Galagan et al.

Fungal Genomics Fungal Genomics
Fungal Genomics Fungal Genomics
Fungal Genomics Fungal Genomics
Fungal Genomics Fungal Genomics
Fungal Genomics Fungal Genomics

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